Transcriptomeassembly

由 V Raghavan 著作 · 2022 · 被引用 64 次 — A typical graph-based approach to de novo transcriptome assembly. The basic idea is to establish a catalog of sub-strings from the RNA-seq reads ...

由 TR Fallon 著作 · 2023 · 被引用 3 次 — Here we present a streamlined and universal de novo transcriptome assembly and annotation pipeline, transXpress, implemented in Snakemake.

De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome.

由 S Kovaka 著作 · 2019 · 被引用 1011 次 — We have demonstrated that StringTie2 can assemble RNA-seq data into full-length transcripts using both high-accuracy short reads and high-error ...

由 V Raghavan 著作 · 2022 · 被引用 64 次 — Here, we present a comprehensive overview of de novo transcriptome assembly and annotation. We discuss the procedures involved, including pre- ...

Both gene construction and transcriptome assemblies have drawbacks. Those methods are based on algorithmically combining information from short reads to ...

由 P Libro 著作 · 2023 · 被引用 1 次 — 5.4.4. It provides a quantitative measure of transcriptome quality and completeness, based on evolutionarily informed expectations of gene ...

由 JA Martin 著作 · 2011 · 被引用 1548 次 — Transcriptome assembly involves an informatics approach to solve an experimental limitation. As sequencing strategies continually improve, it ...

2017年8月10日 — 作者：鄭翰欽/有勁生物科技Genome-guided transcriptome assembly，顧名思義，就是使用基因參考序列(reference genome)的資訊 (